Author: cxdig

Network topology mapping of chemical compounds space

Georgios Tsekenis, Giulio Cimini, Marinos Kalafatis, Achille Giacometti, Tommaso Gili & Guido Caldarelli
Scientific Reports volume 14, Article number: 5266 (2024)

We define bipartite and monopartite relational networks of chemical elements and compounds using two different datasets of inorganic chemical and material compounds, as well as study their topology. We discover that the connectivity between elements and compounds is distributed exponentially for materials, and with a fat tail for chemicals. Compounds networks show similar distribution of degrees, and feature a highly-connected club due to oxygen . Chemical compounds networks appear more modular than material ones, while the communities detected reveal different dominant elements specific to the topology. We successfully reproduce the connectivity of the empirical chemicals and materials networks by using a family of fitness models, where the fitness values are derived from the abundances of the elements in the aggregate compound data. Our results pave the way towards a relational network-based understanding of the inherent complexity of the vast chemical knowledge atlas, and our methodology can be applied to other systems with the ingredient-composite structure.

Read the full article at: www.nature.com

LLM Voting: Human Choices and AI Collective Decision Making

Joshua C. Yang, Marcin Korecki, Damian Dailisan, Carina I. Hausladen, Dirk Helbing

This paper investigates the voting behaviors of Large Language Models (LLMs), particularly OpenAI’s GPT4 and LLaMA2, and their alignment with human voting patterns. Our approach included a human voting experiment to establish a baseline for human preferences and a parallel experiment with LLM agents. The study focused on both collective outcomes and individual preferences, revealing differences in decision-making and inherent biases between humans and LLMs. We observed a trade-off between preference diversity and alignment in LLMs, with a tendency towards more uniform choices as compared to the diverse preferences of human voters. This finding indicates that LLMs could lead to more homogenized collective outcomes when used in voting assistance, underscoring the need for cautious integration of LLMs into democratic processes.

Read the full article at: arxiv.org

A nonadaptive explanation for macroevolutionary patterns in the evolution of complex multicellularity

Emma P. Bingham and William C. Ratcliff

PNAS 121 (7) e2319840121

“Complex multicellularity,” conventionally defined as large organisms with many specialized cell types, has evolved five times independently in eukaryotes, but never within prokaryotes. A number of hypotheses have been proposed to explain this phenomenon, most of which posit that eukaryotes evolved key traits (e.g., dynamic cytoskeletons, alternative mechanisms of gene regulation, or subcellular compartments) which were a necessary prerequisite for the evolution of complex multicellularity. Here, we propose an alternative, nonadaptive hypothesis for this broad macroevolutionary pattern. By binning cells into groups with finite genetic bottlenecks between generations, the evolution of multicellularity greatly reduces the effective population size (Ne) of cellular populations, increasing the role of genetic drift in evolutionary change. While both prokaryotes and eukaryotes experience this phenomenon, they have opposite responses to drift: eukaryotes tend to undergo genomic expansion, providing additional raw genetic material for subsequent multicellular innovation, while prokaryotes generally face genomic erosion. Taken together, we hypothesize that these idiosyncratic lineage-specific evolutionary dynamics play a fundamental role in the long-term divergent evolution of complex multicellularity across the tree of life.

Read the full article at: www.pnas.org

Traffic & Granular Flow 2024

The 15th edition of Traffic and Granular Flow (TGF) will be held in Lyon, France, from December 2nd to December 5th 2024. In-person participation will be favoured.

The international conference on TGF has been held biennially in different parts of the world since 1995. The conference is especially designed for an interdisciplinary audience working in the area of physics, computer sciences, engineering, granular, vehicular and pedestrian flow.

It focuses on giving a global perspective on the latest developments and new ideas in traffic and granular flows broadly speaking which encompasses the fields of granular flow, pedestrian dynamics, collective animal behaviour, and  urban mobility.

Read the full article at: tgf2024.sciencesconf.org

The 15-minute city quantified using human mobility data

Timur Abbiasov, Cate Heine, Sadegh Sabouri, Arianna Salazar-Miranda, Paolo Santi, Edward Glaeser & Carlo Ratti
Nature Human Behaviour (2024)

Amid rising congestion and transport emissions, policymakers are embracing the ‘15-minute city’ model, which envisions neighbourhoods where basic needs can be met within a short walk from home. Prior research has primarily examined amenity access without exploring its relationship to behaviour. We introduce a measure of local trip behaviour using GPS data from 40 million US mobile devices, defining ‘15-minute usage’ as the proportion of consumption-related trips made within a 15-minute walk from home. Our findings show that the median resident makes only 14% of daily consumption trips locally. Differences in access to local amenities can explain 84% and 74% of the variation in 15-minute usage across and within urban areas, respectively. Historical data from New York zoning policies suggest a causal relationship between local access and 15-minute usage. However, we find a trade-off: increased local usage correlates with higher experienced segregation for low-income residents, signalling potential socio-economic challenges in achieving local living.

Read the full article at: www.nature.com