School on Biological Physics across Scales: Pattern Formation. November 11 – 22, 2024,  São Paulo, Brazil

Systems as different as the cellular cytoskeleton, microbial communities in soil, and savanna landscapes have in common the emergence of patterns: random yet organized spatial structures that form in an otherwise translationally invariant space. These structures emerge due to the local, individual-level interactions of agents – proteins, cells, trees – that, on a larger scale, result in nonlinear dynamics for the density field. Crucial phenomena hinge on the formation of these patterns: mitosis, embryo development, bacterial population survival, ecosystem’s robustness to aridification.

While broadly different in scale, these systems can be theoretically described by similar statistical physics frameworks, an approach pioneered by Alan Turing in 1952 and still the focus of very active development. The goal of this school is to bring together experts on these different systems using mathematical modeling, experimental approaches and modern data-driven techniques to engage in an interdisciplinary dialogue about pattern formation in living systems.

There is no registration fee and limited funds are available for travel and local expenses.

More at: www.ictp-saifr.org

See Also: 3rd ICTP-SAIFR Symposium on Current Topics in Molecular Biophysics (CTMB3): October 7 – 9, 2024

COSMOS MIND AND MATTER: Is Mind in Spacetime?

Stuart Kauffman, Sudip Patra

BioSystems

We attempt in this article to formulate a conceptual and testable framework weaving Cosmos, Mind and Matter into a whole. We build on three recent discoveries, each requiring more evidence: i. The particles of the Standard Model, SU(3) x SU(2) x U(1), are formally capable of collective autocatalysis. This leads us to ask what roles such autocatalysis may have played in Cosmogenesis, and in trying to answer, Why our Laws? Why our Constants? A capacity of the particles of SU(3) x SU(2) x U(1) for collective autocatalysis may be open to experimental test, stunning if confirmed. ii. Reasonable evidence now suggests that matter can expand spacetime. The first issue is to establish this claim at or beyond 5 sigma if that can be done. If true, this process may elucidate Dark Matter, Dark Energy and Inflation and require alteration of Einstein’s Field Equations. Cosmology would be transformed. iii. Evidence at 6.49 Sigma suggests that mind can alter the outcome of the two-slit experiment. If widely and independently verified, the foundations of quantum mechanics must be altered. Mind plays a role in the universe. That role may include Cosmic Mind.

Read the full article at: www.sciencedirect.com

The development of ecological systems along paths of least resistance

Jie Deng, Otto X. Cordero, Tadashi Fukami, Simon A. Levin, Robert M. Pringle, Ricard Solé, Serguei Saavedra

A long-standing question in biology is whether there are common principles that characterize the development of ecological systems (the appearance of a group of taxa), regardless of organismal diversity and environmental context. Classic ecological theory holds that these systems develop following a sequenced orderly process that generally proceeds from fast-growing to slow-growing taxa and depends on life-history trade-offs. However, it is also possible that this developmental order is simply the path with the least environmental resistance for survival of the component species and hence favored by probability alone. Here, we use theory and data to show that the order from fast-to slow-growing taxa is the most likely developmental path for diverse systems when local taxon interactions self-organize to minimize environmental resistance. First, we demonstrate theoretically that a sequenced development is more likely than a simultaneous one, at least until the number of iterations becomes so large as to be ecologically implausible. We then show that greater diversity of taxa and life histories improves the likelihood of a sequenced order from fast-to slow-growing taxa. Using data from bacterial and metazoan systems, we present empirical evidence that the developmental order of ecological systems moves along the paths of least environmental resistance. The capacity of simple principles to explain the trend in the developmental order of diverse ecological systems paves the way to an enhanced understanding of the collective features characterizing the diversity of life.

Read the full article at: www.biorxiv.org

Conscious artificial intelligence and biological naturalism

Anil Seth

As artificial intelligence (AI) continues to develop, it is natural to ask whether AI systems can be not only intelligent, but also conscious. I consider why some people think AI might develop consciousness, identifying some biases that lead us astray. I ask what it would take for conscious AI to be a realistic prospect, pushing back against some common assumptions such as the notion that computation provides a sufficient basis for consciousness. I’ll instead make the case for taking seriously the possibility that consciousness might depend on our nature as living organisms – a form of biological naturalism. I will end by exploring some wider issues including testing for consciousness in AI, and ethical considerations arising from AI that either actually is, or convincingly seems to be, conscious.

Read the full article at: osf.io

Infection patterns in simple and complex contagion processes on networks

Contreras DA, Cencetti G, Barrat A

PLoS Comput Biol 20(6): e1012206.

Contagion processes, representing the spread of infectious diseases, information, or social behaviors, are often schematized as taking place on networks, which encode for instance the interactions between individuals. We here observe how the network is explored by the contagion process, i.e. which links are used for contagions and how frequently. The resulting infection pattern depends on the chosen infection model but surprisingly not all the parameters and models features play a role in the infection pattern. We discover for instance that in simple contagion processes, where contagion events involve one connection at a time, the infection patterns are extremely robust across models and parameters. This has consequences in the role of models in decision-making, as it implies that numerical simulations of simple contagion processes using simplified settings can bring important insights even in the case of a new emerging disease whose properties are not yet well known. In complex contagion models instead, in which multiple interactions are needed for a contagion event, non-trivial dependencies on model parameters emerge and infection patterns cannot be confused with those observed for simple contagion.

Read the full article at: journals.plos.org