Data-driven modelling for living systems

Issue organised by Maia Angelova, Krassimir Atanassov, Sergiy Shelyag and Chandan Karmakar

Volume 16 Issue 3 | Interface Focus | The Royal Society

Data-driven modelling in the living system has increasing significance with the abundance of complex data of different modalities. Data are being collected at different scales, from molecular to genetic, cellular, organ, organism and vital signs, to electronic health records. In addition, we produce individual health data, sleep and mobility data collected with wearable devices, as well as data collected from social media, professional networks, workplace and the environment in general. Modelling these data is now possible with the advances of several methods and technologies, all part of the artificial intelligence framework. Modern data analysis is a powerful lens with which we can zoom in and out of the living system, similar to what we can observe with a microscope. This theme issue presents data-driven models which reflect several different angles and lenses to zoom in and out of the human body, to observe and analyse the role and functions of its genes, cells, organs and the interactions between them, as well as the role of the human in the society and environment.

Read the full issue at: royalsocietypublishing.org

Hash Chemistry: Minimal Models for Evolutionary Growth of Complexity

Ilya Horiguchi, Hiroki Sayama

Hash Chemistry is a family of minimalistic evolutionary models in which a deterministic hash function assigns a scalar score to entities of arbitrary size, opening a combinatorially vast possibility space (a “cardinality leap”). Since its introduction, the idea has been realized in several settings, from the original spatial formulation to a fast non-spatial variant and then to structural cellular models. Here we review the Hash Chemistry family as a coherent modeling framework and use it to explore how minimal systems can demonstrate the mechanisms behind multiscale open-ended evolutionary dynamics. The most recent model, Structural Cellular Hash Chemistry (SCHC), successfully demonstrated multiscale ecological interaction/adaptation and complexity growth of replicators in a computationally efficient manner. In this study, we first extend SCHC to incorporate spatial locality and dyadicity of competitive interactions among replicating structures. We show this extension substantially enhances SCHC’s evolutionary dynamics. Furthermore, we explore SCHC in a significantly larger spatial domain using a GPU-accelerated implementation. We show that the size of the space acts as a control parameter for a stochastic, nucleation-like transition between a compact-replicator regime and a runaway size-dominance regime, and we separate the responsible mechanism into a non-spatial, size-biased sampling feedback and a finite-size spatial effect. Altogether, these results illustrate the rich potential of Hash Chemistry as a minimal, mechanistically transparent testbed for studying open-ended evolution across scales.

Read the full article at: arxiv.org

Perspectives on Machine Consciousness | Calum Chace, Ted Lappas

Perspectives on Machine Consciousness asks whether any AIs are conscious today, whether any future ones could be conscious, how we could know, and what implications machine consciousness would have for us and for them.

As AI improves rapidly in performance and capability, these questions are becoming increasingly important. We do not fully understand how AIs work, and even some of the leading LLM developers say they cannot be sure that today’s models are not sentient, though many people are forming relationships with them, sometimes intimate ones. The book explores consciousness alongside our interactions with AI, including the critical need to avoid committing mind crime by causing artificial minds to suffer, as well as considering that if and when superintelligence arrives, its enormous effect on humanity may be significantly determined by whether or not it is conscious. The authors show that machines becoming conscious means we may learn a great deal about our own consciousness – arguably the most important, and yet most mysterious, thing about us.

This book is required reading for anybody developing advanced AI, working in AI safety, responsible for developing AI policies at an organizational or national level, and indeed anybody concerned with the long-term future of humanity.

More at: www.taylorfrancis.com

Swarmalator networks with multihop coupling

Marcus Schref, Udo Schilcher, and Christian Bettstetter
Phys. Rev. E 114, 024216 – Published 18 August, 2026

Swarmalator systems intertwine two forms of collective behavior, swarming and synchronization, leading to the emergence of specific space-time patterns. Scaling the model to real-world phenomena and technical applications is problematic due to the assumption of global coupling among all swarmalators, which is impractical under physical constraints on interaction range. Conversely, purely local coupling was shown to be infeasible. To address this gap, we introduce and evaluate the concept of multihop coupling for swarmalators, which preserves the locality of physical interactions but propagates state information throughout the network via hop-limited and probabilistic flooding. It is demonstrated that convergence to the original emergent patterns can be achieved in a reliable and fast manner while keeping overhead low. A practical guideline for selecting the range, hop limit, and forwarding probability is provided. The range required for convergence can be approximated by the connectivity threshold of random geometric graphs.

Read the full article at: journals.aps.org

Group size effects and collective misalignment in LLM multi-agent systems

Ariel Flint, Luca Maria Aiello, Romualdo Pastor-Satorras, and Andrea Baronchelli

PNAS August 18, 2026 123 (34) e2531697123

Large language models (LLMs) are increasingly deployed in large numbers, and their interactions make collective behavior harder to anticipate than that of a single model. While most studies compare one model with a collective of fixed size, we ask a key yet overlooked question: What is the role of group size? We show that interaction among LLMs can magnify individual biases, generate new ones, or even overturn individual preferences, and that, crucially, these effects scale in unexpected, nonlinear ways with group size. Our results demonstrate that more is different for LLM populations: The number of interacting agents is a key driver of the dynamics, with implications for the design and governance of multi-agent AI systems.

Read the full article at: www.pnas.org