Category: Papers

Quantifying emergence and self-organisation of Enterobacter cloacae microbial communities

From microbial communities to cancer cells, many such complex collectives embody emergent and self-organising behaviour. Such behaviour drives cells to develop composite features such as formation of aggregates or expression of specific genes as a result of cell-cell interactions within a cell population. Currently, we lack universal mathematical tools for analysing the collective behaviour of biological swarms. To address this, we propose a multifractal inspired framework to measure the degree of emergence and self-organisation from scarce spatial (geometric) data and apply it to investigate the evolution of the spatial arrangement of Enterobacter cloacae aggregates. In a plate of semi-solid media, Enterobacter cloacae form a spatially extended pattern of high cell density aggregates. These aggregates nucleate from the site of inoculation and radiate outward to fill the entire plate. Multifractal analysis was used to characterise these patterns and calculate dynamics changes in emergence and self-organisation within the bacterial population. In particular, experimental results suggest that the new aggregates align their location with respect to the old ones leading to a decrease in emergence and increase in self-organisation.

 

Quantifying emergence and self-organisation of Enterobacter cloacae microbial communities
Valeriu Balaban, Sean Lim, Gaurav Gupta, James Boedicker & Paul Bogdan 
Scientific Reportsvolume 8, Article number: 12416 (2018)

Source: www.nature.com

Self-Optimization in Continuous-Time Recurrent Neural Networks

A recent advance in complex adaptive systems has revealed a new unsupervised learning technique called self-modeling or self-optimization. Basically, a complex network that can form an associative memory of the state configurations of the attractors on which it converges will optimize its structure: it will spontaneously generalize over these typically suboptimal attractors and thereby also reinforce more optimal attractors—even if these better solutions are normally so hard to find that they have never been previously visited. Ideally, after sufficient self-optimization the most optimal attractor dominates the state space, and the network will converge on it from any initial condition. This technique has been applied to social networks, gene regulatory networks, and neural networks, but its application to less restricted neural controllers, as typically used in evolutionary robotics, has not yet been attempted. Here we show for the first time that the self-optimization process can be implemented in a continuous-time recurrent neural network with asymmetrical connections. We discuss several open challenges that must still be addressed before this technique could be applied in actual robotic scenarios.

 

Self-Optimization in Continuous-Time Recurrent Neural Networks

Mario Zarco and Tom Froese

Front. Robot. AI, 21 August 2018 | https://doi.org/10.3389/frobt.2018.00096

Source: www.frontiersin.org

An information-theoretic approach to self-organisation: Emergence of complex interdependencies in coupled dynamical systems

Self-organisation lies at the core of fundamental but still unresolved scientific questions, and holds the promise of de-centralised paradigms crucial for future technological developments. While self-organising processes have been traditionally explained by the tendency of dynamical systems to evolve towards specific configurations, or attractors, we see self-organisation as a consequence of the interdependencies that those attractors induce. Building on this intuition, in this work we develop a theoretical framework for understanding and quantifying self-organisation based on coupled dynamical systems and multivariate information theory. We propose a metric of global structural strength that identifies when self-organisation appears, and a multi-layered decomposition that explains the emergent structure in terms of redundant and synergistic interdependencies. We illustrate our framework on elementary cellular automata, showing how it can detect and characterise the emergence of complex structures.

 

An information-theoretic approach to self-organisation: Emergence of complex interdependencies in coupled dynamical systems
Fernando Rosas, Pedro A.M. Mediano, Martin Ugarte, Henrik J. Jensen

Source: arxiv.org

A Methodology for Evaluating Algorithms That Calculate Social Influence in Complex Social Networks

Online social networks are complex systems often involving millions or even billions of users. Understanding the dynamics of a social network requires analysing characteristics of the network (in its entirety) and the users (as individuals). This paper focuses on calculating user’s social influence, which depends on (i) the user’s positioning in the social network and (ii) interactions between the user and all other users in the social network. Given that data on all users in the social network is required to calculate social influence, something not applicable for today’s social networks, alternative approaches relying on a limited set of data on users are necessary. However, these approaches introduce uncertainty in calculating (i.e., predicting) the value of social influence. Hence, a methodology is proposed for evaluating algorithms that calculate social influence in complex social networks; this is done by identifying the most accurate and precise algorithm. The proposed methodology extends the traditional ground truth approach, often used in descriptive statistics and machine learning. Use of the proposed methodology is demonstrated using a case study incorporating four algorithms for calculating a user’s social influence.

 

Complexity
Volume 2018, Article ID 1084795, 20 pages
https://doi.org/10.1155/2018/1084795
A Methodology for Evaluating Algorithms That Calculate Social Influence in Complex Social Networks
Vanja Smailovic, Vedran Podobnik and Ignac Lovrek

Source: www.hindawi.com

Train Global, Test Local: Privacy-preserving Learning of Cost-effectiveness in Decentralized Systems

The mandate of citizens for more socially responsible information systems that respect privacy and autonomy calls for a computational and storage decentral- ization. Crowd-sourced sensor networks monitor energy consumption and traffic jams. Distributed ledgers systems provide unprecedented opportunities to perform secure peer-to-peer transactions using blockchain. However, decentralized systems often show performance bottlenecks that undermine their broader adoption: prop- agating information in a network is costly and time-consuming. Optimization of cost-effectiveness with supervised machine learning is challenging. Training usu- ally requires privacy-sensitive local data, for instance, adjusting the communication rate based on citizens’ mobility. This paper studies the following research question: How feasible is to train with privacy-preserving aggregate data and test on local data to improve cost-effectiveness of a decentralized system? Centralized machine learning optimization strategies are applied to DIAS, the Dynamic Intelligent Aggre- gation Service and they are compared to decentralized self-adaptive strategies that use local data instead. Experimental evaluation with a testing set of 2184 decentral- ized networks of 3000 nodes aggregating real-world Smart Grid data confirms the feasibility of a linear regression strategy to improve both estimation accuracy and communication cost, while the other optimization strategies show trade-offs.

 

Train Global, Test Local: Privacy-preserving Learning of Cost-effectiveness in Decentralized Systems
Jovan Nikolic ́, Marcel Schöengens and Evangelos Pournaras

Source: evangelospournaras.com